Package jebl.evolution.trees

Class CladeSystem

java.lang.Object
jebl.evolution.trees.CladeSystem
Direct Known Subclasses:
AttributedCladeSystem
public class CladeSystem extends Object
Stores a set of unique clades for a tree
Version:
$Id: CladeSystem.java 892 2008-02-27 03:53:11Z twobeers $
Author:
Andrew Rambaut

  • Constructor Details

    • CladeSystem

      public CladeSystem()

    • CladeSystem

      public CladeSystem(RootedTree tree)
      Parameters:
      tree -

  • Method Details

    • getCladeCount

      public int getCladeCount()
      get number of unique clades

    • getClade

      public Set<Taxon> getClade(int index)

    • getCladeString

      public String getCladeString(int index)

    • getCladeFrequency

      public double getCladeFrequency(int index)
      get clade frequency

    • add

      public void add(RootedTree tree)
      adds all the clades in the tree