MEGAExporter (JEBL2 lib API)

java.lang.Object

jebl.evolution.io.MEGAExporter

All Implemented Interfaces:: AlignmentExporter

public class MEGAExporter extends Object implements AlignmentExporter

* Export to MEGA.

Version:: $Id: MEGAExporter.java 530 2006-11-15 04:01:44Z stevensh $
Author:: Joseph Heled

Constructor Summary

Constructors

Constructor

Description

MEGAExporter(Writer writer, String comment)
Method Summary

Modifier and Type

Method

Description

void

exportAlignment(Alignment alignment)

Deprecated.
Files created by this export method won't be importable by MEGA (because they don't have titles).

void

exportAlignment(Alignment alignment, String name)

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- MEGAExporter
  
  public MEGAExporter(Writer writer, String comment)
  
  Parameters:
  
  writer - where export text goes
Method Details
- exportAlignment
  
  public void exportAlignment(Alignment alignment, String name) throws IOException
  
  Parameters:
  
  alignment - the alignment to export
  
  name - the name of the alignment
  
  Throws:
  
  IOException
- exportAlignment
  
  public void exportAlignment(Alignment alignment) throws IOException
  
  Deprecated.
  Files created by this export method won't be importable by MEGA (because they don't have titles). Use exportAlignment(jebl.evolution.alignments.Alignment, String) instead.
  
  Description copied from interface: AlignmentExporter
  
  export one alignment.
  
  Specified by:
  
  exportAlignment in interface AlignmentExporter
  
  Parameters:
  
  alignment -
  
  Throws:
  
  IOException