Package jebl.evolution.align.scores

Class AminoAcidScores

java.lang.Object
jebl.evolution.align.scores.Scores
jebl.evolution.align.scores.AminoAcidScores
All Implemented Interfaces:
ScoreMatrix
Direct Known Subclasses:
Blosum45, Blosum50, Blosum55, Blosum60, Blosum62, Blosum65, Blosum70, Blosum75, Blosum80, Blosum85, Blosum90, Pam100, Pam110, Pam120, Pam130, Pam140, Pam150, Pam160, Pam170, Pam180, Pam190, Pam200, Pam210, Pam220, Pam230, Pam240, Pam250
public class AminoAcidScores extends Scores
Version:
$Id: AminoAcidScores.java 360 2006-06-22 07:42:48Z pepster $
Author:
Alexei Drummond

  • Constructor Details

    • AminoAcidScores

      public AminoAcidScores()

    • AminoAcidScores

      public AminoAcidScores(float m, float n)

  • Method Details

    • getName

      public String getName()
      Returns:
      human readable name

    • getAlphabet

      public final String getAlphabet()
      Returns:
      a string containing the valid characters for this score matrix.