Constant Field Values

jebl.evolution.*

• jebl.evolution.io.FastaImporter
  Modifier and Type

  Constant Field

  Value

  public static final String

  descriptionPropertyName

  "description"
• jebl.evolution.io.NexusExporter
  Modifier and Type

  Constant Field

  Value

  public static final int

  MAX_ROW_LENGTH

  60

  public static final String

  treeNameAttributeKey

  "name"

• jebl.evolution.sequences.AminoAcids
  Modifier and Type

  Constant Field

  Value

  public static final int

  CANONICAL_STATE_COUNT

  22

  public static final String

  NAME

  "amino acid"

  public static final int

  STATE_COUNT

  29
• jebl.evolution.sequences.Codons
  Modifier and Type

  Constant Field

  Value

  public static final int

  CANONICAL_STATE_COUNT

  64

  public static final String

  NAME

  "codon"

  public static final int

  STATE_COUNT

  66
• jebl.evolution.sequences.Nucleotides
  Modifier and Type

  Constant Field

  Value

  public static final int

  CANONICAL_STATE_COUNT

  4

  public static final String

  NAME

  "nucleotide"

  public static final int

  STATE_COUNT

  17

• jebl.evolution.trees.CalculateSplitRates
  Modifier and Type

  Constant Field

  Value

  public final String

  INDICATOR

  "changed"

  public final String

  RATE

  "rate"
• jebl.evolution.trees.ConsensusTreeBuilder<T>
  Modifier and Type

  Constant Field

  Value

  public static final String

  DEFAULT_SUPPORT_ATTRIBUTE_NAME

  "Consensus support(%)"

jebl.math.*

• jebl.math.MachineAccuracy
  Modifier and Type

  Constant Field

  Value

  public static final double

  EPSILON

  2.220446049250313E-16

  public static final double

  SQRT_EPSILON

  1.4901161193847656E-8

  public static final double

  SQRT_SQRT_EPSILON

  1.220703125E-4