| write.qvalue {qvalue} | R Documentation |
Write results to file
Description
Write the results of the q-value object to a file.
Usage
write.qvalue(x, file = NULL, sep = " ", eol = "\n", na = "NA",
row.names = FALSE, col.names = TRUE)
Arguments
x |
A q-value object. |
file |
Output filename (optional). |
sep |
Separation between columns. |
eol |
Character to print at the end of each line. |
na |
String to use when there are missing values. |
row.names |
logical. Specify whether row names are to be printed. |
col.names |
logical. Specify whether column names are to be printed. |
Details
The output file includes: (i) p-values, (ii)
q-values (iii) local FDR values, and (iv) the estimate of \pi_0,
one per line. If an FDR significance
level was specified in the call to qvalue, the significance
level is printed and an indicator of significance is included.
Value
Nothing of interest.
Author(s)
John D. Storey, Andrew J. Bass
See Also
qvalue, plot.qvalue,
summary.qvalue
Examples
# import data
data(hedenfalk)
p <- hedenfalk$p
# write q-value object
qobj <- qvalue(p)
write.qvalue(qobj, file="myresults.txt")
[Package qvalue version 2.42.0 Index]