TOPPFLASHDeconv Class Reference

Inheritance diagram for TOPPFLASHDeconv:

Collaboration diagram for TOPPFLASHDeconv:

Public Member Functions
	TOPPFLASHDeconv ()

Protected Member Functions
void	registerOptionsAndFlags_ () override
Param	getSubsectionDefaults_ (const String &prefix) const override
ExitCodes	main_ (int, const char **) override

Constructor & Destructor Documentation

TOPPFLASHDeconv()

TOPPFLASHDeconv ( )

inline

Member Function Documentation

getSubsectionDefaults_()

Param getSubsectionDefaults_ ( const String & prefix ) const

inlineoverrideprotected

Returns default parameters for each subsection. FLASHDeconvAlgorithm stores all parameters in a single Param object with prefixes (SD:, ft:, iq:). This function splits them into separate subsections for a cleaner CLI interface: -FD:* -> top-level algorithm parameters (after removing SD:, ft:, iq: prefixed params) -SD:* -> spectral deconvolution parameters -ft:* -> feature tracing parameters -iq:* -> isobaric quantification parameters

main_()

ExitCodes main_ ( int , const char **  )

inlineoverrideprotected

References files().

registerOptionsAndFlags_()

void registerOptionsAndFlags_ ( )

inlineoverrideprotected