FLASHDeconv performs ultrafast deconvolution of top-down proteomics MS datasets.

FLASHDeconv takes an mzML file as input and outputs deconvolved feature list (.tsv) and deconvolved spectra files (.tsv, .mzML, .msalign, .feature). FLASHDeconv uses SpectralDeconvolution for spectral level deconvolution and MassFeatureTrace to detect mass features. For MSn spectra, the precursor masses (not peak m/zs) are determined by tracking MSn-1 spectra deconvolution information.

See https://openms.de/FLASHDeconv for more information.

The command line parameters of this tool are:

INI file documentation of this tool: